Codon map (64 triplets → 20 aa + start/stop)
Fusion Schema (how the layers snap together)
- ASCII → LOGOS ring (26-D):
Letters map 1-to-1 to ring axes A…Z with fixed angle θ and opcode role (as you defined). Case is normalized to its axis; we still keep the ASCII codes for audit. - ASCII → Codon stream:
A codon is just three ASCII bases read in a rolling window from the base alphabet {A,C,G,T} (DNA) or {A,C,G,U} (RNA). All other ASCII simply act as delimiters (frame guards) unless explicitly promoted (see “Genetic punctuation set”). - Ring ↔ Codon linkage:
We don’t invent fake biology. Instead we bind biological semantics where it’s valid:- Bases:
A,C,G,T/Umap directly (ASCII) to nucleotides. - Start:
AUG(RNA) — we surface withA,U,Gin ASCII. - Stops:
UAA, UAG, UGA(RNA). We also map ASCII*as a render synonym for “Stop” (standard in protein FASTA/proteomics).
- Bases:
Everything else (digits, punctuation) is given LOGOS-functional roles (separators, routing, parity) that protect the reading frame and the linguistic “straight line.”
A) Letters (A–Z) fused to 26-D ring + codon relevance
| Axis | θ° | LOGOS Opcode (role) | ASCII (upper/lower) | Codon / Bio relevance |
|---|---|---|---|---|
| A | 0.0 | Origin / Initialize | 65 ‘A’, 97 ‘a’ | Base A; in Start AUG; many codons |
| B | 13.8 | Build / Contain | 66 ‘B’, 98 ‘b’ | (no base) delimiter token (biolinguistic “block”) |
| C | 27.7 | Channel / Conduct | 67 ‘C’, 99 ‘c’ | Base C |
| D | 41.5 | Door / Transform | 68 ‘D’, 100 ‘d’ | (no base) “enter domain / open reading context” |
| E | 55.4 | Exhale / Broadcast | 69 ‘E’, 101 ‘e’ | (no base) export / emit marker |
| F | 69.2 | Framework / Constrain | 70 ‘F’, 102 ‘f’ | (no base) frame tag (metadata) |
| G | 83.1 | Gate / Guard | 71 ‘G’, 103 ‘g’ | Base G; in Start AUG |
| H | 96.9 | Hinge / Modulate | 72 ‘H’, 104 ‘h’ | (no base) helicity / fold hint (semantics-only) |
| I | 110.8 | Identity / Index | 73 ‘I’, 105 ‘i’ | (no base) index / locus tag |
| J | 124.6 | Journey / Branch | 74 ‘J’, 106 ‘j’ | (no base) branch pointer |
| K | 138.5 | Key / Credential | 75 ‘K’, 107 ‘k’ | (no base) keying token |
| L | 152.3 | Link / Cornerstone | 76 ‘L’, 108 ‘l’ | (no base) linker token |
| M | 166.2 | Memory / Archive | 77 ‘M’, 109 ‘m’ | (no base) memo/mark; protein Met is biological result of AUG |
| N | 180.0 | Nexus / Network | 78 ‘N’, 110 ‘n’ | (no base) node delimiter; biol.: Asn (N) amino-acid letter |
| O | 193.8 | Orb / Closure | 79 ‘O’, 111 ‘o’ | (no base) orbit/close segment |
| P | 207.7 | Pillar / Project | 80 ‘P’, 112 ‘p’ | (no base) project; Pro (P) amino-acid letter |
| Q | 221.5 | Quest / Query | 81 ‘Q’, 113 ‘q’ | (no base) query; Gln (Q) amino-acid letter |
| R | 235.4 | River / Redirect | 82 ‘R’, 114 ‘r’ | (no base) redirect; Arg (R) amino-acid letter |
| S | 249.2 | Serpent / Shape | 83 ‘S’, 115 ‘s’ | (no base) shape; Ser (S) amino-acid letter |
| T | 263.1 | Tower / Commit | 84 ‘T’, 116 ‘t’ | Base T (DNA); Thr (T) amino-acid letter |
| U | 276.9 | Urn / Unify | 85 ‘U’, 117 ‘u’ | Base U (RNA); in Start AUG |
| V | 290.8 | Vector / Focus | 86 ‘V’, 118 ‘v’ | (no base) focus; Val (V) amino-acid letter |
| W | 304.6 | Wave / Weave | 87 ‘W’, 119 ‘w’ | (no base) weave; Trp (W) amino-acid letter |
| X | 318.5 | Cross / Integrate | 88 ‘X’, 120 ‘x’ | (no base) wildcard (‘X’ unknown aa) |
| Y | 332.3 | Yoke / Choice (wrap) | 89 ‘Y’, 121 ‘y’ | (no base) branch; Tyr (Y) amino-acid letter |
| Z | 346.2 | Zenith / Seal (reset) | 90 ‘Z’, 122 ‘z’ | (no base) seal; Glu (E)/Gln (Q) ≠ Z (Z rarely used; safe as seal) |
Notes:
• We keep biological truth: only A,C,G,T/U are bases; Start is AUG; Stops UAA/UAG/UGA.
• The other letters carry LOGOS ops and (optionally) protein one-letter codes for rendering protein sequences, not for generating codons.
B) Genetic punctuation set (ASCII control that protects or marks frames)
| ASCII | Dec | Role in fusion |
|---|---|---|
* | 42 | Stop (render synonym for UAA/UAG/UGA) |
- | 45 | Gap / alignment placeholder (no codon) |
> | 62 | Open coding region (start locus) |
< | 60 | Close coding region (end locus) |
| ` | ` | 124 |
: | 58 | Locus/feature delimiter |
; | 59 | Statement separator |
, | 44 | List separator (multiple CDS) |
. | 46 | End of statement (non-stop) |
# | 35 | Comment / metadata (ignore for codons) |
space | 32 | Whitespace (ignore) |
\n | 10 | Newline (ignore) |
Everything else (digits, brackets, quotes, etc.) defaults to non-coding separators in the codon stream, but retains its LOGOS keyboard/ASCII semantics for UI, parity, routing, etc.
C) Canonical codon table (RNA) with LOGOS overlays
I’m keeping it exact (no inventions): RNA codons (U,C,A,G) → 20 amino acids + Start/Stops. The LOGOS column shows which axis is explicitly present in the triplet and inherits that axis’s opcode color during visualization (purely as an overlay, not to change biology).
| Codon | AA | Name | LOGOS overlay (letters present) |
|---|---|---|---|
| UUU / UUC | F | Phe | U (Urn), U (Urn), U/C (Urn/Channel) |
| UUA / UUG | L | Leu | U, U, A/G (Urn, Urn, Origin/Gate) |
| CUU / CUC / CUA / CUG | L | Leu | C-axis present (Channel) |
| AUU / AUC / AUA | I | Ile | A-axis present (Origin) |
| AUG | M | Met (Start) | A–U–G (Origin–Urn–Gate) |
| GUU / GUC / GUA / GUG | V | Val | G-axis present (Gate) |
| UCU / UCC / UCA / UCG | S | Ser | U/C overlays |
| CCU / CCC / CCA / CCG | P | Pro | C overlays |
| ACU / ACC / ACA / ACG | T | Thr | A/C overlays (T amino-acid letter, axis T present elsewhere) |
| GCU / GCC / GCA / GCG | A | Ala | G/C overlays |
| UAU / UAC | Y | Tyr | U/A overlays (Y amino-acid letter) |
| CAU / CAC | H | His | C/A overlays |
| AAU / AAC | N | Asn | A/A overlays (N amino-acid letter) |
| GAU / GAC | D | Asp | G/A overlays |
| UGU / UGC | C | Cys | U/G overlays |
| UGG | W | Trp | U–G–G (Urn–Gate–Gate) (W amino-acid letter) |
| CGU / CGC / CGA / CGG | R | Arg | C/G overlays (R) |
| AGU / AGC | S | Ser | A/G overlays |
| AGA / AGG | R | Arg | A/G overlays |
| GGU / GGC / GGA / GGG | G | Gly | G overlays |
| UAA / UAG / UGA | Stop | — | Stop (render *); U + A/G overlays |
If you prefer DNA input, the same table applies with
T↔U. Conversion rule: in a coding span, mapT→Ubefore codonization.
D) Minimal fusion algorithm (how text turns into codons + stays on the ring)
- Normalize case and convert T→U inside a
<…>coding span (optional flag if you typed RNA already). - Scan ASCII left→right; collect only
A,C,G,Uinto a 3-char buffer; everything else applies LOGOS functions (separators, parity, etc.). - On 3 chars: emit codon, look up AA/Start/Stop.
- Overlay LOGOS color by highlighting the ring axes present in the codon (e.g., AUG lights A,U,G axes).
- Frame guards:
|,<,>flush/mark buffers;*prints a Stop explicitly. - Proofchain: store both raw ASCII and biological read in parallel.
This keeps the “straight line”: ASCII keystrokes → ring-locked letters → valid biology when (and only when) you type bases.
E) Quick audit views you can use immediately
1) ASCII → Base mask (in coding spans)
- Pass to codon:
A C G U(orA C G Twith T→U pre-map) - Delimiter / control: everything else (including digits & punctuation)
2) Letter → Axis cheat-sheet (angles & roles)
You already approved these; they’re the same ones we’ve been using (A0.0°, …, Z346.2°) and they’re now the global overlay palette.
Why this works (and is safe)
- No fake biology. Only A,C,G,T/U create codons.
- Everything else still matters. Those characters hold the LOGOS operating roles (frame control, parity checks, separators, metadata), which protect coherence and reading frames—exactly the ADIP/SLMP principles you set.
- Ring integrity is continuous. Every letter you type sits on its axis; when a biological event happens (e.g., AUG), you get a biological statement overlaid on the same map.